Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
CISHQ9NSE2 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 MIR658-201ENST00000385210 100 ntBASIC15.9■□□□□ 0.14
CISHQ9NSE2 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 AC099336.1-201ENST00000417053 1171 ntBASIC15.9■□□□□ 0.14
CISHQ9NSE2 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 AC023310.1-201ENST00000554836 735 ntBASIC15.9■□□□□ 0.14
CISHQ9NSE2 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 AP005482.1-201ENST00000563722 1273 ntBASIC15.9■□□□□ 0.14
CISHQ9NSE2 MIR4259-201ENST00000584466 101 ntBASIC15.9■□□□□ 0.14
CISHQ9NSE2 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 BX088702.1-201ENST00000610784 235 ntBASIC15.9■□□□□ 0.14
CISHQ9NSE2 COX11-210ENST00000639671 696 ntBASIC15.9■□□□□ 0.14
CISHQ9NSE2 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 MYO15B-237ENST00000642007 4893 ntBASIC15.9■□□□□ 0.14
CISHQ9NSE2 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
CISHQ9NSE2 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC15.9■□□□□ 0.14
CISHQ9NSE2 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 AL161772.1-201ENST00000610494 4412 ntBASIC15.89■□□□□ 0.13
CISHQ9NSE2 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 STX1A-203ENST00000395155 783 ntTSL 2 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 HLA-V-201ENST00000429037 534 ntBASIC15.89■□□□□ 0.13
CISHQ9NSE2 CNN2P10-201ENST00000443067 918 ntBASIC15.89■□□□□ 0.13
CISHQ9NSE2 CSF2RBP1-201ENST00000447905 391 ntBASIC15.89■□□□□ 0.13
CISHQ9NSE2 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 AC133552.6-201ENST00000613406 534 ntBASIC15.89■□□□□ 0.13
CISHQ9NSE2 MIR6805-201ENST00000615055 62 ntBASIC15.89■□□□□ 0.13
CISHQ9NSE2 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 AC002472.3-201ENST00000640124 621 ntBASIC15.89■□□□□ 0.13
CISHQ9NSE2 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 KRT8P4-201ENST00000509735 1454 ntBASIC15.89■□□□□ 0.13
CISHQ9NSE2 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
CISHQ9NSE2 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
CISHQ9NSE2 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CISHQ9NSE2 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.88■□□□□ 0.13
CISHQ9NSE2 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
CISHQ9NSE2 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.88■□□□□ 0.13
CISHQ9NSE2 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CISHQ9NSE2 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
CISHQ9NSE2 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
CISHQ9NSE2 AP001267.2-201ENST00000532619 2086 ntBASIC15.88■□□□□ 0.13
CISHQ9NSE2 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
CISHQ9NSE2 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.88■□□□□ 0.13
CISHQ9NSE2 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
CISHQ9NSE2 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms