Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 RPS2P32-201ENST00000439199 892 ntBASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 AC139749.1-202ENST00000617529 3139 ntBASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
TRIM39Q9HCM9 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 AC023090.2-201ENST00000625182 2110 ntBASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 AC006058.4-201ENST00000624016 1670 ntBASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 RNA5SP412-201ENST00000516234 123 ntBASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
TRIM39Q9HCM9 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRIM39Q9HCM9 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms