Protein–RNA interactions for Protein: Q9BYV2

TRIM54, Tripartite motif-containing protein 54, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54Q9BYV2 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
TRIM54Q9BYV2 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM54Q9BYV2 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM54Q9BYV2 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM54Q9BYV2 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.82□□□□□ -0.04
TRIM54Q9BYV2 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM54Q9BYV2 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
TRIM54Q9BYV2 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 MIR661-201ENST00000384842 89 ntBASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 ELK1P1-201ENST00000485699 580 ntBASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 AC009486.1-201ENST00000569860 813 ntBASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 YTHDF3-AS1-201ENST00000603538 718 ntBASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 CICP4-201ENST00000447359 2812 ntBASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
TRIM54Q9BYV2 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 KLF2P2-201ENST00000416807 1039 ntBASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 AC190387.1-201ENST00000551683 408 ntBASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 TP53TG3HP-202ENST00000569755 579 ntBASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 AC027307.3-201ENST00000594262 1100 ntBASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 AC092364.2-202ENST00000597012 1073 ntBASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 AC018665.1-201ENST00000622927 1362 ntBASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 PEG13-201ENST00000631594 5667 ntBASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
TRIM54Q9BYV2 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms