Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AC018892.3-201ENST00000623986 2499 ntBASIC13.56□□□□□ -0.24
USB1Q9BQ65 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AP003680.1-201ENST00000598970 3660 ntBASIC13.56□□□□□ -0.24
USB1Q9BQ65 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AC010082.1-201ENST00000411797 546 ntTSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 MTND2P39-201ENST00000457230 764 ntBASIC13.56□□□□□ -0.24
USB1Q9BQ65 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AC079316.1-201ENST00000548397 411 ntBASIC13.56□□□□□ -0.24
USB1Q9BQ65 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
USB1Q9BQ65 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC13.56□□□□□ -0.24
USB1Q9BQ65 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 CICP8-201ENST00000455800 2813 ntBASIC13.55□□□□□ -0.24
USB1Q9BQ65 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 AC006455.6-201ENST00000426192 893 ntBASIC13.55□□□□□ -0.24
USB1Q9BQ65 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 AC012441.1-201ENST00000446669 685 ntBASIC13.55□□□□□ -0.24
USB1Q9BQ65 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 AC022137.2-201ENST00000503482 481 ntBASIC13.55□□□□□ -0.24
USB1Q9BQ65 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 AP002807.1-203ENST00000534517 664 ntTSL 2 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
USB1Q9BQ65 AC023968.2-201ENST00000560593 1049 ntBASIC13.55□□□□□ -0.24
USB1Q9BQ65 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 KSR1-207ENST00000578981 748 ntTSL 4 BASIC13.55□□□□□ -0.24
USB1Q9BQ65 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms