Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 MYO15B-237ENST00000642007 4893 ntBASIC13.3□□□□□ -0.28
SKA3Q8IX90 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 GRAP-202ENST00000395635 834 ntTSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 ACTBP8-201ENST00000403258 1108 ntBASIC13.3□□□□□ -0.28
SKA3Q8IX90 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 AC012441.1-201ENST00000446669 685 ntBASIC13.3□□□□□ -0.28
SKA3Q8IX90 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 AC068587.3-201ENST00000526613 355 ntBASIC13.3□□□□□ -0.28
SKA3Q8IX90 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 AC005225.4-201ENST00000557330 545 ntBASIC13.3□□□□□ -0.28
SKA3Q8IX90 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 IGHV3-72-202ENST00000621503 303 ntBASIC13.3□□□□□ -0.28
SKA3Q8IX90 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 KRT8P35-201ENST00000483942 1338 ntBASIC13.3□□□□□ -0.28
SKA3Q8IX90 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 AC010327.5-201ENST00000586923 3061 ntBASIC13.3□□□□□ -0.28
SKA3Q8IX90 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC13.3□□□□□ -0.28
SKA3Q8IX90 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
SKA3Q8IX90 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 AC007686.3-201ENST00000619017 3487 ntBASIC13.29□□□□□ -0.28
SKA3Q8IX90 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 EIF3FP3-201ENST00000434851 1086 ntBASIC13.29□□□□□ -0.28
SKA3Q8IX90 TTTY23B-201ENST00000442790 549 ntBASIC13.29□□□□□ -0.28
SKA3Q8IX90 DUX4L47-201ENST00000566374 394 ntBASIC13.29□□□□□ -0.28
SKA3Q8IX90 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 AC055811.4-201ENST00000624039 1754 ntBASIC13.29□□□□□ -0.28
SKA3Q8IX90 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.29□□□□□ -0.28
SKA3Q8IX90 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
SKA3Q8IX90 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
SKA3Q8IX90 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.28□□□□□ -0.28
SKA3Q8IX90 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
SKA3Q8IX90 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.28□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms