Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 FDPSP7-201ENST00000429043 1054 ntBASIC12.07□□□□□ -0.48
VPS13CQ709C8 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 RHEB-207ENST00000496004 744 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 AP005212.2-201ENST00000584979 510 ntBASIC12.07□□□□□ -0.48
VPS13CQ709C8 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 MBP-201ENST00000354542 575 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 AC004554.1-201ENST00000422830 1468 ntBASIC12.07□□□□□ -0.48
VPS13CQ709C8 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 VPS18-202ENST00000558474 873 ntTSL 3 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 AC124068.2-201ENST00000569473 1109 ntBASIC12.07□□□□□ -0.48
VPS13CQ709C8 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
VPS13CQ709C8 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
VPS13CQ709C8 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 RBM4-207ENST00000506523 654 ntTSL 3 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AC018846.1-201ENST00000568231 183 ntBASIC12.06□□□□□ -0.48
VPS13CQ709C8 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AL160191.2-201ENST00000603975 601 ntBASIC12.06□□□□□ -0.48
VPS13CQ709C8 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 RNVU1-8-201ENST00000364272 125 ntBASIC12.06□□□□□ -0.48
VPS13CQ709C8 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 F11R-204ENST00000537746 1245 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AL590235.1-201ENST00000564650 861 ntBASIC12.06□□□□□ -0.48
VPS13CQ709C8 NAV1-210ENST00000593583 726 ntBASIC12.06□□□□□ -0.48
VPS13CQ709C8 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 MIR6746-201ENST00000620971 63 ntBASIC12.06□□□□□ -0.48
VPS13CQ709C8 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC12.06□□□□□ -0.48
VPS13CQ709C8 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
VPS13CQ709C8 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms