Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 TPM3P8-201ENST00000330554 643 ntBASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 AC245100.3-201ENST00000441281 285 ntBASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 GAPDHP21-201ENST00000450301 1010 ntBASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 ENPP7P14-201ENST00000621765 1040 ntBASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 INTS4P1-203ENST00000641008 3683 ntBASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SYNE3Q6ZMZ3 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 USP35-204ENST00000530267 2419 ntTSL 2 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 AC016694.1-201ENST00000434179 700 ntBASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 AL138709.1-201ENST00000614840 1693 ntBASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SYNE3Q6ZMZ3 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
SYNE3Q6ZMZ3 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms