Protein–RNA interactions for Protein: Q495M9

USH1G, Usher syndrome type-1G protein, humanhuman

Predictions only

Length 461 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1GQ495M9 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USH1GQ495M9 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USH1GQ495M9 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USH1GQ495M9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
USH1GQ495M9 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USH1GQ495M9 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.1■□□□□ 0.33
USH1GQ495M9 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC17.1■□□□□ 0.33
USH1GQ495M9 AC007292.2-201ENST00000593524 1812 ntBASIC17.1■□□□□ 0.33
USH1GQ495M9 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USH1GQ495M9 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USH1GQ495M9 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USH1GQ495M9 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
USH1GQ495M9 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.1■□□□□ 0.33
USH1GQ495M9 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.1■□□□□ 0.33
USH1GQ495M9 AC010141.1-201ENST00000411585 623 ntBASIC17.1■□□□□ 0.33
USH1GQ495M9 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.1■□□□□ 0.33
USH1GQ495M9 ACTG1P17-201ENST00000558391 1119 ntBASIC17.1■□□□□ 0.33
USH1GQ495M9 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.1■□□□□ 0.33
USH1GQ495M9 DUX4L46-201ENST00000566845 751 ntBASIC17.1■□□□□ 0.33
USH1GQ495M9 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USH1GQ495M9 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
USH1GQ495M9 SNX12-206ENST00000622259 661 ntTSL 5 BASIC17.1■□□□□ 0.33
USH1GQ495M9 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC17.1■□□□□ 0.33
USH1GQ495M9 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
USH1GQ495M9 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.1■□□□□ 0.33
USH1GQ495M9 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USH1GQ495M9 LINC01101-201ENST00000622953 1884 ntBASIC17.1■□□□□ 0.33
USH1GQ495M9 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
USH1GQ495M9 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
USH1GQ495M9 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
USH1GQ495M9 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 AK6-201ENST00000380818 1183 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 AKR7A2P1-201ENST00000460134 915 ntBASIC17.09■□□□□ 0.33
USH1GQ495M9 HIST2H2BC-201ENST00000498492 580 ntBASIC17.09■□□□□ 0.33
USH1GQ495M9 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.09■□□□□ 0.33
USH1GQ495M9 SCARNA20.5-201ENST00000516991 142 ntBASIC17.09■□□□□ 0.33
USH1GQ495M9 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.09■□□□□ 0.33
USH1GQ495M9 AC022748.3-201ENST00000621828 275 ntBASIC17.09■□□□□ 0.33
USH1GQ495M9 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
USH1GQ495M9 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC17.09■□□□□ 0.33
USH1GQ495M9 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC17.09■□□□□ 0.33
USH1GQ495M9 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
USH1GQ495M9 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USH1GQ495M9 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
USH1GQ495M9 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
USH1GQ495M9 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USH1GQ495M9 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.08■□□□□ 0.33
USH1GQ495M9 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
USH1GQ495M9 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USH1GQ495M9 AJ011931.1-201ENST00000618749 2492 ntBASIC17.08■□□□□ 0.33
USH1GQ495M9 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USH1GQ495M9 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.08■□□□□ 0.33
USH1GQ495M9 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
USH1GQ495M9 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
USH1GQ495M9 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USH1GQ495M9 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USH1GQ495M9 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms