Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGCS2P54868 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HMGCS2P54868 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.07■□□□□ 0.32
HMGCS2P54868 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HMGCS2P54868 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
HMGCS2P54868 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 F10-203ENST00000409306 1450 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGCS2P54868 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGCS2P54868 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HMGCS2P54868 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HMGCS2P54868 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
HMGCS2P54868 HPGD-203ENST00000422112 805 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGCS2P54868 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGCS2P54868 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGCS2P54868 TSPY25P-201ENST00000429463 745 ntBASIC17.06■□□□□ 0.32
HMGCS2P54868 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGCS2P54868 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGCS2P54868 AP000358.1-201ENST00000456260 156 ntBASIC17.06■□□□□ 0.32
HMGCS2P54868 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC17.06■□□□□ 0.32
HMGCS2P54868 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC17.06■□□□□ 0.32
HMGCS2P54868 AP002803.1-201ENST00000528836 498 ntBASIC17.06■□□□□ 0.32
HMGCS2P54868 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC17.06■□□□□ 0.32
HMGCS2P54868 MIR3188-201ENST00000583494 85 ntBASIC17.06■□□□□ 0.32
HMGCS2P54868 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC17.06■□□□□ 0.32
HMGCS2P54868 WT1-AS_6.1-201ENST00000614919 121 ntBASIC17.06■□□□□ 0.32
HMGCS2P54868 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGCS2P54868 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.06■□□□□ 0.32
HMGCS2P54868 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.06■□□□□ 0.32
HMGCS2P54868 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
HMGCS2P54868 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 LINC01101-201ENST00000622953 1884 ntBASIC17.05■□□□□ 0.32
HMGCS2P54868 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
HMGCS2P54868 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 RNA5SP359-201ENST00000364838 113 ntBASIC17.05■□□□□ 0.32
HMGCS2P54868 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGCS2P54868 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGCS2P54868 TPM1-223ENST00000560445 485 ntTSL 3 BASIC17.05■□□□□ 0.32
HMGCS2P54868 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
HMGCS2P54868 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
HMGCS2P54868 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC17.05■□□□□ 0.32
HMGCS2P54868 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HMGCS2P54868 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.05■□□□□ 0.32
HMGCS2P54868 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 AL136172.1-201ENST00000598590 1394 ntBASIC17.04■□□□□ 0.32
HMGCS2P54868 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 MRPL37P1-201ENST00000592451 1337 ntBASIC17.04■□□□□ 0.32
HMGCS2P54868 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC17.04■□□□□ 0.32
HMGCS2P54868 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HMGCS2P54868 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms