Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 AC012073.1-201ENST00000606114 1108 ntBASIC15.54■□□□□ 0.08
COL4A4P53420 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A4P53420 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL4A4P53420 AHCYP4-201ENST00000419201 1315 ntBASIC15.54■□□□□ 0.08
COL4A4P53420 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL4A4P53420 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC15.54■□□□□ 0.08
COL4A4P53420 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A4P53420 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 RN7SL277P-201ENST00000481521 288 ntBASIC15.54■□□□□ 0.08
COL4A4P53420 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC15.54■□□□□ 0.08
COL4A4P53420 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC15.54■□□□□ 0.08
COL4A4P53420 AREG-202ENST00000502307 956 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A4P53420 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC15.54■□□□□ 0.08
COL4A4P53420 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
COL4A4P53420 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A4P53420 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC15.54■□□□□ 0.08
COL4A4P53420 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
COL4A4P53420 KHSRPP1-201ENST00000427983 1768 ntBASIC15.53■□□□□ 0.08
COL4A4P53420 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
COL4A4P53420 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC15.53■□□□□ 0.08
COL4A4P53420 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
COL4A4P53420 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
COL4A4P53420 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC15.53■□□□□ 0.08
COL4A4P53420 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
COL4A4P53420 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC15.53■□□□□ 0.08
COL4A4P53420 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 API5-203ENST00000455725 2257 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 AGPAT5P1-201ENST00000455855 1019 ntBASIC15.53■□□□□ 0.08
COL4A4P53420 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC15.53■□□□□ 0.08
COL4A4P53420 AC105390.1-201ENST00000511330 560 ntTSL 4 BASIC15.53■□□□□ 0.08
COL4A4P53420 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.53■□□□□ 0.08
COL4A4P53420 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC15.53■□□□□ 0.08
COL4A4P53420 PEBP1P2-201ENST00000603980 558 ntBASIC15.53■□□□□ 0.08
COL4A4P53420 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC15.53■□□□□ 0.08
COL4A4P53420 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC15.53■□□□□ 0.08
COL4A4P53420 AP001184.1-201ENST00000637936 376 ntBASIC15.53■□□□□ 0.08
COL4A4P53420 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
COL4A4P53420 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A4P53420 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
COL4A4P53420 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A4P53420 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A4P53420 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
COL4A4P53420 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.52■□□□□ 0.08
COL4A4P53420 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A4P53420 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
COL4A4P53420 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.52■□□□□ 0.08
COL4A4P53420 FAM90A21P-201ENST00000510875 1396 ntBASIC15.52■□□□□ 0.08
COL4A4P53420 FAM90A15P-201ENST00000514465 1395 ntBASIC15.52■□□□□ 0.08
COL4A4P53420 FAM90A6P-201ENST00000515148 1394 ntBASIC15.52■□□□□ 0.08
COL4A4P53420 FAM90A16P-201ENST00000526662 1395 ntBASIC15.52■□□□□ 0.08
COL4A4P53420 FAM90A9P-201ENST00000527940 1395 ntBASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms