Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC073210.1-201ENST00000414799 232 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SCN4AP35499 STK24P1-201ENST00000455035 1291 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC17.07■□□□□ 0.32
SCN4AP35499 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC17.07■□□□□ 0.32
SCN4AP35499 AC006116.2-201ENST00000589958 988 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 NEK4P3-201ENST00000604859 544 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 URAHP-205ENST00000610227 398 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC17.07■□□□□ 0.32
SCN4AP35499 LAP3P2-201ENST00000454686 1454 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 LINC00528-201ENST00000600723 2160 ntBASIC17.07■□□□□ 0.32
SCN4AP35499 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC17.07■□□□□ 0.32
SCN4AP35499 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SCN4AP35499 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SCN4AP35499 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.06■□□□□ 0.32
SCN4AP35499 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.06■□□□□ 0.32
SCN4AP35499 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SCN4AP35499 BAX-205ENST00000391871 687 ntTSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC17.06■□□□□ 0.32
SCN4AP35499 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.06■□□□□ 0.32
SCN4AP35499 AC005740.1-201ENST00000515639 522 ntBASIC17.06■□□□□ 0.32
SCN4AP35499 GPX3-202ENST00000517973 612 ntTSL 3 BASIC17.06■□□□□ 0.32
SCN4AP35499 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC17.06■□□□□ 0.32
SCN4AP35499 AP003351.1-201ENST00000522743 668 ntTSL 3 BASIC17.06■□□□□ 0.32
SCN4AP35499 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC17.06■□□□□ 0.32
SCN4AP35499 PRMT1P1-201ENST00000604252 1009 ntBASIC17.06■□□□□ 0.32
SCN4AP35499 HPX-213ENST00000615166 826 ntTSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SCN4AP35499 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SCN4AP35499 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SCN4AP35499 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC17.06■□□□□ 0.32
SCN4AP35499 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SCN4AP35499 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SCN4AP35499 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 PPP1R7-205ENST00000404405 1009 ntTSL 3 BASIC17.05■□□□□ 0.32
SCN4AP35499 BX679664.3-201ENST00000414070 555 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 AC098657.1-201ENST00000416270 1135 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC17.05■□□□□ 0.32
SCN4AP35499 AC092903.1-201ENST00000466506 262 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 AC113935.1-201ENST00000471722 555 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC17.05■□□□□ 0.32
SCN4AP35499 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC17.05■□□□□ 0.32
SCN4AP35499 AC120498.7-201ENST00000562876 330 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 ANKRD26P1-203ENST00000569528 966 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC17.05■□□□□ 0.32
SCN4AP35499 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC17.05■□□□□ 0.32
SCN4AP35499 AC004466.2-201ENST00000614749 516 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 AC091769.1-201ENST00000619576 568 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 AL357143.1-203ENST00000639750 881 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC17.05■□□□□ 0.32
SCN4AP35499 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.05■□□□□ 0.32
SCN4AP35499 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.05■□□□□ 0.32
SCN4AP35499 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC17.05■□□□□ 0.32
SCN4AP35499 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC17.05■□□□□ 0.32
SCN4AP35499 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.05■□□□□ 0.32
SCN4AP35499 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 OR7E115P-201ENST00000382617 1024 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 RPL3P2-204ENST00000413027 1203 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 FAM21EP-201ENST00000417804 985 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC17.05■□□□□ 0.32
SCN4AP35499 HFE-209ENST00000461397 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC17.05■□□□□ 0.32
SCN4AP35499 RN7SL602P-201ENST00000578326 324 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 RN7SL718P-201ENST00000581254 303 ntBASIC17.05■□□□□ 0.32
SCN4AP35499 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC17.05■□□□□ 0.32
SCN4AP35499 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC17.05■□□□□ 0.32
SCN4AP35499 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SCN4AP35499 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SCN4AP35499 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms