Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.68□□□□□ -0.06
SHMT2P34897 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SHMT2P34897 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.68□□□□□ -0.06
SHMT2P34897 AC245100.3-201ENST00000441281 285 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 AC022210.1-201ENST00000449856 793 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 RNA5SP486-201ENST00000515961 83 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.68□□□□□ -0.06
SHMT2P34897 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 NOP2-220ENST00000545915 630 ntTSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 AC079316.1-201ENST00000548397 411 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.68□□□□□ -0.06
SHMT2P34897 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.68□□□□□ -0.06
SHMT2P34897 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC14.68□□□□□ -0.06
SHMT2P34897 AC133552.6-201ENST00000613406 534 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SHMT2P34897 ENPP7P14-201ENST00000621765 1040 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 RHOXF1P1-202ENST00000635473 501 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.68□□□□□ -0.06
SHMT2P34897 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
SHMT2P34897 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.68□□□□□ -0.06
SHMT2P34897 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.67□□□□□ -0.06
SHMT2P34897 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.67□□□□□ -0.06
SHMT2P34897 CNN2P8-201ENST00000421872 913 ntBASIC14.67□□□□□ -0.06
SHMT2P34897 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.67□□□□□ -0.06
SHMT2P34897 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 AL359881.2-201ENST00000602973 570 ntBASIC14.67□□□□□ -0.06
SHMT2P34897 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 AC138951.2-201ENST00000623455 1161 ntBASIC14.67□□□□□ -0.06
SHMT2P34897 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SHMT2P34897 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SHMT2P34897 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
SHMT2P34897 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
SHMT2P34897 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SHMT2P34897 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
SHMT2P34897 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC14.66□□□□□ -0.06
SHMT2P34897 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
SHMT2P34897 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.66□□□□□ -0.06
SHMT2P34897 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
SHMT2P34897 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms