Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CHRNA1P02708 FRMPD2B-201ENST00000431305 1347 ntBASIC16.1■□□□□ 0.17
CHRNA1P02708 MRPL37P1-201ENST00000592451 1337 ntBASIC16.1■□□□□ 0.17
CHRNA1P02708 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHRNA1P02708 AC018629.1-201ENST00000623381 1736 ntBASIC16.1■□□□□ 0.17
CHRNA1P02708 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.1■□□□□ 0.17
CHRNA1P02708 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
CHRNA1P02708 CAP2P1-201ENST00000557743 1390 ntBASIC16.1■□□□□ 0.17
CHRNA1P02708 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.1■□□□□ 0.17
CHRNA1P02708 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHRNA1P02708 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC16.09■□□□□ 0.17
CHRNA1P02708 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.09■□□□□ 0.17
CHRNA1P02708 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 MIR3677-201ENST00000578964 60 ntBASIC16.09■□□□□ 0.17
CHRNA1P02708 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 AL805961.1-201ENST00000642026 753 ntBASIC16.09■□□□□ 0.17
CHRNA1P02708 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
CHRNA1P02708 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
CHRNA1P02708 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC16.09■□□□□ 0.17
CHRNA1P02708 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CHRNA1P02708 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.09■□□□□ 0.17
CHRNA1P02708 AC138035.3-201ENST00000622706 2791 ntBASIC16.09■□□□□ 0.17
CHRNA1P02708 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.09■□□□□ 0.17
CHRNA1P02708 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.09■□□□□ 0.17
CHRNA1P02708 AL590440.2-201ENST00000641973 1595 ntBASIC16.09■□□□□ 0.17
CHRNA1P02708 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHRNA1P02708 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
CHRNA1P02708 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CHRNA1P02708 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.08■□□□□ 0.17
CHRNA1P02708 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.08■□□□□ 0.17
CHRNA1P02708 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
CHRNA1P02708 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC16.08■□□□□ 0.16
CHRNA1P02708 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA1P02708 RPL8P2-201ENST00000430538 502 ntBASIC16.08■□□□□ 0.16
CHRNA1P02708 AC098935.1-201ENST00000446057 611 ntBASIC16.08■□□□□ 0.16
CHRNA1P02708 AC104784.1-201ENST00000473096 294 ntBASIC16.08■□□□□ 0.16
CHRNA1P02708 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA1P02708 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
CHRNA1P02708 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.08■□□□□ 0.16
CHRNA1P02708 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC16.08■□□□□ 0.16
CHRNA1P02708 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 PHBP15-201ENST00000574228 665 ntBASIC16.08■□□□□ 0.16
CHRNA1P02708 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC16.08■□□□□ 0.16
CHRNA1P02708 AC103810.10-201ENST00000606504 343 ntBASIC16.08■□□□□ 0.16
CHRNA1P02708 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA1P02708 AP003419.4-201ENST00000616071 517 ntBASIC16.08■□□□□ 0.16
CHRNA1P02708 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CHRNA1P02708 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.08■□□□□ 0.16
CHRNA1P02708 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.08■□□□□ 0.16
CHRNA1P02708 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC16.08■□□□□ 0.16
CHRNA1P02708 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA1P02708 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA1P02708 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.08■□□□□ 0.16
CHRNA1P02708 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CHRNA1P02708 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
CHRNA1P02708 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.08■□□□□ 0.16
CHRNA1P02708 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms