Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
MSH4O15457 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
MSH4O15457 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.68■□□□□ 0.26
MSH4O15457 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.68■□□□□ 0.26
MSH4O15457 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
MSH4O15457 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC16.68■□□□□ 0.26
MSH4O15457 KLF2P1-201ENST00000447438 1042 ntBASIC16.68■□□□□ 0.26
MSH4O15457 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 ZNF767P-206ENST00000513792 565 ntBASIC16.68■□□□□ 0.26
MSH4O15457 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 AC103988.2-201ENST00000561804 725 ntBASIC16.68■□□□□ 0.26
MSH4O15457 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
MSH4O15457 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
MSH4O15457 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC16.68■□□□□ 0.26
MSH4O15457 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.68■□□□□ 0.26
MSH4O15457 FER1L4-210ENST00000615531 5998 ntBASIC16.68■□□□□ 0.26
MSH4O15457 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
MSH4O15457 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 AC106881.1-201ENST00000605849 3329 ntBASIC16.67■□□□□ 0.26
MSH4O15457 AC006504.5-208ENST00000588784 2401 ntBASIC16.67■□□□□ 0.26
MSH4O15457 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
MSH4O15457 AC244394.1-201ENST00000435000 1665 ntBASIC16.67■□□□□ 0.26
MSH4O15457 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.67■□□□□ 0.26
MSH4O15457 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
MSH4O15457 MVK-217ENST00000639206 367 ntTSL 5 BASIC16.67■□□□□ 0.26
MSH4O15457 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
MSH4O15457 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 COCH-203ENST00000460581 2688 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 AC139712.1-201ENST00000378256 1875 ntBASIC16.67■□□□□ 0.26
MSH4O15457 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.67■□□□□ 0.26
MSH4O15457 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
MSH4O15457 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.66■□□□□ 0.26
MSH4O15457 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 AL596257.1-201ENST00000641463 2694 ntBASIC16.66■□□□□ 0.26
MSH4O15457 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
MSH4O15457 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
MSH4O15457 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.66■□□□□ 0.26
MSH4O15457 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.66■□□□□ 0.26
MSH4O15457 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.66■□□□□ 0.26
MSH4O15457 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.66■□□□□ 0.26
MSH4O15457 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.66■□□□□ 0.26
MSH4O15457 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.66■□□□□ 0.26
MSH4O15457 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC16.66■□□□□ 0.26
MSH4O15457 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 EMC4-209ENST00000559421 497 ntTSL 2 BASIC16.66■□□□□ 0.26
MSH4O15457 AC100827.2-201ENST00000563214 1194 ntBASIC16.66■□□□□ 0.26
MSH4O15457 MIR4525-201ENST00000580000 75 ntBASIC16.66■□□□□ 0.26
MSH4O15457 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.66■□□□□ 0.26
MSH4O15457 AC007663.3-201ENST00000609632 465 ntBASIC16.66■□□□□ 0.26
MSH4O15457 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.66■□□□□ 0.26
MSH4O15457 AC022748.3-201ENST00000621828 275 ntBASIC16.66■□□□□ 0.26
MSH4O15457 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
MSH4O15457 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms