Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
COL6A5A8TX70 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC11.3□□□□□ -0.6
COL6A5A8TX70 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AIG1-203ENST00000367596 559 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 MIR648-201ENST00000385046 94 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 ASS1P1-201ENST00000402854 1237 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC093106.1-201ENST00000437271 352 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 MYL6-215ENST00000549566 685 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC016582.2-202ENST00000587765 1094 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AKIP1-203ENST00000309377 1327 ntAPPRIS P3 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 B3GNTL1-201ENST00000320865 1383 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC003102.2-201ENST00000589195 1469 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AL591122.2-201ENST00000624125 1853 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 JTB-202ENST00000356648 1040 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 PMF1-203ENST00000368279 1019 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC079325.1-201ENST00000430386 857 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 GRAMD4P6-201ENST00000556999 244 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 CDC37P2-201ENST00000562287 1029 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 SRD5A3-AS1-203ENST00000591915 709 ntTSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 EMP3-204ENST00000596315 761 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 RDM1-216ENST00000613308 779 ntAPPRIS ALT2 TSL 3 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
COL6A5A8TX70 FAM226B-201ENST00000602508 1490 ntBASIC11.29□□□□□ -0.6
COL6A5A8TX70 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
COL6A5A8TX70 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 FAM21EP-201ENST00000417804 985 ntBASIC11.28□□□□□ -0.6
COL6A5A8TX70 KCNC4-AS1-201ENST00000455967 748 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 KYAT1-201ENST00000302586 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
COL6A5A8TX70 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
COL6A5A8TX70 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms