Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 SOCS2P1-201ENST00000417727 557 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC120045.2-201ENST00000567334 178 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC133539.2-201ENST00000604757 467 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AL358472.5-202ENST00000641448 1267 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AL158070.2-201ENST00000623713 1621 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC023090.2-201ENST00000625182 2110 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AL354702.1-201ENST00000442006 1960 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 BEND3P1-201ENST00000421591 1944 ntBASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 DRD5P1-201ENST00000456605 1438 ntBASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 C1QBPP1-201ENST00000400117 770 ntBASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AC026410.3-201ENST00000514280 936 ntBASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AC093813.1-201ENST00000605066 256 ntBASIC12.13□□□□□ -0.47
FOXA2Q9Y261 AC107373.2-201ENST00000607735 490 ntBASIC12.13□□□□□ -0.47
FOXA2Q9Y261 MIR8072-201ENST00000614241 80 ntBASIC12.13□□□□□ -0.47
FOXA2Q9Y261 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
FOXA2Q9Y261 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms