Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
LIMA1Q9UHB6 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
LIMA1Q9UHB6 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
LIMA1Q9UHB6 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
LIMA1Q9UHB6 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
LIMA1Q9UHB6 AC089987.1-201ENST00000551654 2209 ntBASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 AC093004.1-201ENST00000508850 424 ntBASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 AC093512.1-201ENST00000617969 520 ntBASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIMA1Q9UHB6 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AC104596.2-201ENST00000512793 793 ntBASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AC055876.2-201ENST00000531834 546 ntBASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AC092552.1-201ENST00000547243 906 ntBASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AP005019.2-201ENST00000615104 511 ntBASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 AC008761.3-201ENST00000624803 892 ntBASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIMA1Q9UHB6 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 OR2I1P-209ENST00000641730 5365 ntBASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 RN7SKP230-201ENST00000365642 335 ntBASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 ACTBP8-201ENST00000403258 1108 ntBASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 SOCS2P1-201ENST00000417727 557 ntBASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.31■□□□□ 0.2
LIMA1Q9UHB6 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms