Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 AC245884.6-201ENST00000515672 1067 ntBASIC16.74■□□□□ 0.27
COL20A1Q9P218 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 FGFR3P5-201ENST00000564496 886 ntBASIC16.74■□□□□ 0.27
COL20A1Q9P218 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL20A1Q9P218 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL20A1Q9P218 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL20A1Q9P218 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL20A1Q9P218 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL20A1Q9P218 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL20A1Q9P218 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL20A1Q9P218 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
COL20A1Q9P218 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL20A1Q9P218 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 RN7SL769P-201ENST00000469386 295 ntBASIC16.73■□□□□ 0.27
COL20A1Q9P218 RN7SL720P-201ENST00000488178 304 ntBASIC16.73■□□□□ 0.27
COL20A1Q9P218 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 AL161670.2-201ENST00000557650 1227 ntBASIC16.73■□□□□ 0.27
COL20A1Q9P218 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 AL157813.1-201ENST00000612996 587 ntBASIC16.73■□□□□ 0.27
COL20A1Q9P218 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL20A1Q9P218 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 KRT8P19-201ENST00000551916 1455 ntBASIC16.73■□□□□ 0.27
COL20A1Q9P218 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL20A1Q9P218 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 KRT18P36-201ENST00000411618 1276 ntBASIC16.72■□□□□ 0.27
COL20A1Q9P218 PDIA3P2-201ENST00000428073 158 ntBASIC16.72■□□□□ 0.27
COL20A1Q9P218 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 AL133499.1-201ENST00000596207 608 ntBASIC16.72■□□□□ 0.27
COL20A1Q9P218 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 AC015967.2-201ENST00000624092 234 ntBASIC16.72■□□□□ 0.27
COL20A1Q9P218 AC006435.4-201ENST00000625037 234 ntBASIC16.72■□□□□ 0.27
COL20A1Q9P218 AL356737.1-201ENST00000634391 234 ntBASIC16.72■□□□□ 0.27
COL20A1Q9P218 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.72■□□□□ 0.27
COL20A1Q9P218 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
COL20A1Q9P218 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
COL20A1Q9P218 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.71■□□□□ 0.27
COL20A1Q9P218 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms