Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 RN7SL81P-201ENST00000493781 261 ntBASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 TMCO5B-205ENST00000530020 894 ntBASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 AP003398.1-201ENST00000531124 318 ntBASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 AC005618.3-201ENST00000624928 458 ntBASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 DOC2GP-204ENST00000639052 2548 ntBASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC87Q9NVE4 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 ORAOV1P1-201ENST00000503108 395 ntBASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 NSD1-211ENST00000511258 809 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 AP001184.1-201ENST00000637936 376 ntBASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CCDC87Q9NVE4 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 RN7SL530P-201ENST00000485097 298 ntBASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 AC138466.4-201ENST00000623965 852 ntBASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 AC073911.3-201ENST00000624401 631 ntBASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 AC092135.3-201ENST00000624151 1846 ntBASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CCDC87Q9NVE4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
CCDC87Q9NVE4 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms