Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 AL589702.1-201ENST00000641229 1509 ntBASIC13.32□□□□□ -0.28
MMP28Q9H239 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.32□□□□□ -0.28
MMP28Q9H239 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC13.32□□□□□ -0.28
MMP28Q9H239 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC13.32□□□□□ -0.28
MMP28Q9H239 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
MMP28Q9H239 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
MMP28Q9H239 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
MMP28Q9H239 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.31□□□□□ -0.28
MMP28Q9H239 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.31□□□□□ -0.28
MMP28Q9H239 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 BEND3P3-201ENST00000611030 2440 ntBASIC13.31□□□□□ -0.28
MMP28Q9H239 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.31□□□□□ -0.28
MMP28Q9H239 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
MMP28Q9H239 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
MMP28Q9H239 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
MMP28Q9H239 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 CBR1-202ENST00000399191 838 ntTSL 3 BASIC13.31□□□□□ -0.28
MMP28Q9H239 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC13.31□□□□□ -0.28
MMP28Q9H239 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.31□□□□□ -0.28
MMP28Q9H239 SPCS2P4-201ENST00000436160 681 ntBASIC13.31□□□□□ -0.28
MMP28Q9H239 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
MMP28Q9H239 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.31□□□□□ -0.28
MMP28Q9H239 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.31□□□□□ -0.28
MMP28Q9H239 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC13.31□□□□□ -0.28
MMP28Q9H239 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.31□□□□□ -0.28
MMP28Q9H239 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.31□□□□□ -0.28
MMP28Q9H239 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC13.31□□□□□ -0.28
MMP28Q9H239 NKG7-205ENST00000600427 520 ntTSL 3 BASIC13.31□□□□□ -0.28
MMP28Q9H239 AC106028.4-201ENST00000614509 607 ntBASIC13.31□□□□□ -0.28
MMP28Q9H239 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC13.31□□□□□ -0.28
MMP28Q9H239 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC13.31□□□□□ -0.28
MMP28Q9H239 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
MMP28Q9H239 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC13.31□□□□□ -0.28
MMP28Q9H239 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
MMP28Q9H239 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.31□□□□□ -0.28
MMP28Q9H239 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 AC016397.2-201ENST00000624848 1985 ntBASIC13.31□□□□□ -0.28
MMP28Q9H239 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
MMP28Q9H239 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
MMP28Q9H239 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
MMP28Q9H239 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 FAM90A12P-201ENST00000519497 2375 ntBASIC13.3□□□□□ -0.28
MMP28Q9H239 FAM90A24P-201ENST00000520792 2369 ntBASIC13.3□□□□□ -0.28
MMP28Q9H239 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.3□□□□□ -0.28
MMP28Q9H239 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
MMP28Q9H239 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.3□□□□□ -0.28
MMP28Q9H239 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.3□□□□□ -0.28
MMP28Q9H239 AL592309.1-201ENST00000443127 649 ntBASIC13.3□□□□□ -0.28
MMP28Q9H239 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.3□□□□□ -0.28
MMP28Q9H239 AC098859.1-201ENST00000502915 1238 ntBASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms