Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 USB1-205ENST00000561743 1135 ntTSL 3 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SMC1BQ8NDV3 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 AC078925.2-201ENST00000624013 1973 ntBASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 AC005052.1-201ENST00000625181 2492 ntBASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 CICP12-201ENST00000455801 843 ntBASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 CASP3-205ENST00000517513 964 ntTSL 5 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 DUT-207ENST00000559416 635 ntTSL 2 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 AC110057.1-201ENST00000636031 898 ntBASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SMC1BQ8NDV3 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SMC1BQ8NDV3 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.52■□□□□ 0.39
SMC1BQ8NDV3 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
SMC1BQ8NDV3 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC17.52■□□□□ 0.39
SMC1BQ8NDV3 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SMC1BQ8NDV3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
SMC1BQ8NDV3 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 PCDHA14-201ENST00000506751 2298 ntBASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SMC1BQ8NDV3 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms