Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
USP39Q53GS9 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
USP39Q53GS9 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.22■□□□□ 0.03
USP39Q53GS9 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.22■□□□□ 0.03
USP39Q53GS9 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
USP39Q53GS9 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.22■□□□□ 0.03
USP39Q53GS9 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC15.22■□□□□ 0.03
USP39Q53GS9 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.22■□□□□ 0.03
USP39Q53GS9 HIST2H2BB-201ENST00000449108 381 ntBASIC15.22■□□□□ 0.03
USP39Q53GS9 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC15.22■□□□□ 0.03
USP39Q53GS9 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 AC100850.1-201ENST00000506768 649 ntBASIC15.22■□□□□ 0.03
USP39Q53GS9 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC15.22■□□□□ 0.03
USP39Q53GS9 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC15.22■□□□□ 0.03
USP39Q53GS9 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.22■□□□□ 0.03
USP39Q53GS9 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 AC005730.2-201ENST00000564549 1184 ntBASIC15.22■□□□□ 0.03
USP39Q53GS9 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC15.22■□□□□ 0.03
USP39Q53GS9 RN7SL774P-201ENST00000577467 290 ntBASIC15.22■□□□□ 0.03
USP39Q53GS9 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.22■□□□□ 0.03
USP39Q53GS9 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC15.22■□□□□ 0.03
USP39Q53GS9 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC15.22■□□□□ 0.03
USP39Q53GS9 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.22■□□□□ 0.03
USP39Q53GS9 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC15.22■□□□□ 0.03
USP39Q53GS9 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.22■□□□□ 0.03
USP39Q53GS9 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.22■□□□□ 0.03
USP39Q53GS9 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 MST1L-201ENST00000442552 2185 ntBASIC15.22■□□□□ 0.03
USP39Q53GS9 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.22■□□□□ 0.03
USP39Q53GS9 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 AC127383.1-201ENST00000444697 1800 ntBASIC15.22■□□□□ 0.03
USP39Q53GS9 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.22■□□□□ 0.03
USP39Q53GS9 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
USP39Q53GS9 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
USP39Q53GS9 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
USP39Q53GS9 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
USP39Q53GS9 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 AL136309.1-201ENST00000403917 691 ntBASIC15.21■□□□□ 0.03
USP39Q53GS9 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC15.21■□□□□ 0.03
USP39Q53GS9 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.21■□□□□ 0.03
USP39Q53GS9 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 CHMP1AP1-201ENST00000445563 662 ntBASIC15.21■□□□□ 0.03
USP39Q53GS9 FTLP1-201ENST00000449155 526 ntBASIC15.21■□□□□ 0.03
USP39Q53GS9 RPS2P36-201ENST00000456516 831 ntBASIC15.21■□□□□ 0.03
USP39Q53GS9 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.21■□□□□ 0.03
USP39Q53GS9 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15.21■□□□□ 0.03
USP39Q53GS9 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC15.21■□□□□ 0.03
USP39Q53GS9 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC15.21■□□□□ 0.03
USP39Q53GS9 SAMD11P1-201ENST00000571429 661 ntBASIC15.21■□□□□ 0.03
USP39Q53GS9 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
USP39Q53GS9 AL645728.2-202ENST00000641679 227 ntBASIC15.21■□□□□ 0.03
USP39Q53GS9 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.21■□□□□ 0.03
USP39Q53GS9 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
USP39Q53GS9 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
USP39Q53GS9 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
USP39Q53GS9 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
USP39Q53GS9 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms