Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 FO393414.2-201ENST00000405153 598 ntBASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 TECR-220ENST00000600083 1204 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 AC007431.3-201ENST00000623221 587 ntBASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 COCH-203ENST00000460581 2688 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC12.54□□□□□ -0.4
PDLIM3Q53GG5 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AZGP1P1-201ENST00000411909 902 ntBASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AL355994.2-201ENST00000447882 704 ntBASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AC135586.1-201ENST00000539323 574 ntBASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AL583810.1-201ENST00000553344 1045 ntBASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 CHCHD2P3-201ENST00000603038 451 ntBASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AC106872.11-201ENST00000605838 421 ntBASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AC018529.1-201ENST00000613063 361 ntBASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 AC087499.5-201ENST00000452760 1342 ntBASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
PDLIM3Q53GG5 SON-203ENST00000381679 7860 ntTSL 5 BASIC12.53□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms