Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 AC005730.2-201ENST00000564549 1184 ntBASIC14.45□□□□□ -0.1
COL28A1Q2UY09 PPY2P-201ENST00000582808 702 ntBASIC14.45□□□□□ -0.1
COL28A1Q2UY09 AC000095.1-201ENST00000603208 874 ntBASIC14.45□□□□□ -0.1
COL28A1Q2UY09 RNF146-211ENST00000609447 607 ntTSL 4 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 AC103691.2-201ENST00000618824 433 ntBASIC14.45□□□□□ -0.1
COL28A1Q2UY09 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 AL805961.1-201ENST00000642026 753 ntBASIC14.45□□□□□ -0.1
COL28A1Q2UY09 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 AC013268.4-201ENST00000637413 2228 ntBASIC14.45□□□□□ -0.1
COL28A1Q2UY09 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
COL28A1Q2UY09 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 AL161772.1-201ENST00000610494 4412 ntBASIC14.44□□□□□ -0.1
COL28A1Q2UY09 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 AC010234.1-201ENST00000494599 870 ntBASIC14.44□□□□□ -0.1
COL28A1Q2UY09 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 AC087045.2-201ENST00000606279 1003 ntBASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 GRK6P1-201ENST00000400595 1711 ntBASIC14.44□□□□□ -0.1
COL28A1Q2UY09 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
COL28A1Q2UY09 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
COL28A1Q2UY09 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms