Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.21■□□□□ 0.35
CTCFP49711 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 AC136759.1-202ENST00000530858 2194 ntBASIC17.21■□□□□ 0.35
CTCFP49711 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC17.21■□□□□ 0.35
CTCFP49711 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CTCFP49711 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC17.21■□□□□ 0.35
CTCFP49711 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17.21■□□□□ 0.35
CTCFP49711 ACTG1P19-201ENST00000418987 1116 ntBASIC17.21■□□□□ 0.35
CTCFP49711 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.21■□□□□ 0.35
CTCFP49711 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC17.21■□□□□ 0.35
CTCFP49711 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.21■□□□□ 0.35
CTCFP49711 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CTCFP49711 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
CTCFP49711 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CTCFP49711 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
CTCFP49711 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
CTCFP49711 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CTCFP49711 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17.21■□□□□ 0.34
CTCFP49711 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
CTCFP49711 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
CTCFP49711 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 AC055811.4-201ENST00000624039 1754 ntBASIC17.2■□□□□ 0.34
CTCFP49711 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.2■□□□□ 0.34
CTCFP49711 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 AC007950.2-201ENST00000615045 2347 ntBASIC17.2■□□□□ 0.34
CTCFP49711 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.2■□□□□ 0.34
CTCFP49711 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.2■□□□□ 0.34
CTCFP49711 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.2■□□□□ 0.34
CTCFP49711 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC17.2■□□□□ 0.34
CTCFP49711 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC17.2■□□□□ 0.34
CTCFP49711 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC17.2■□□□□ 0.34
CTCFP49711 RNA5SP417-201ENST00000516459 108 ntBASIC17.2■□□□□ 0.34
CTCFP49711 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC17.2■□□□□ 0.34
CTCFP49711 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CTCFP49711 AC110057.1-201ENST00000636031 898 ntBASIC17.2■□□□□ 0.34
CTCFP49711 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.2■□□□□ 0.34
CTCFP49711 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
CTCFP49711 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 KRT8P31-201ENST00000504812 1408 ntBASIC17.2■□□□□ 0.34
CTCFP49711 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CTCFP49711 AC022188.1-201ENST00000620960 1664 ntBASIC17.2■□□□□ 0.34
CTCFP49711 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC17.19■□□□□ 0.34
CTCFP49711 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CTCFP49711 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.19■□□□□ 0.34
CTCFP49711 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.19■□□□□ 0.34
CTCFP49711 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CTCFP49711 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC17.19■□□□□ 0.34
CTCFP49711 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CTCFP49711 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms