Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 AC004066.1-201ENST00000502488 802 ntBASIC14.16□□□□□ -0.14
SOX3P41225 AC106760.1-201ENST00000508690 800 ntBASIC14.16□□□□□ -0.14
SOX3P41225 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.16□□□□□ -0.14
SOX3P41225 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 AL008721.1-201ENST00000609964 604 ntBASIC14.16□□□□□ -0.14
SOX3P41225 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
SOX3P41225 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
SOX3P41225 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
SOX3P41225 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
SOX3P41225 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.15□□□□□ -0.14
SOX3P41225 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
SOX3P41225 KRT18P25-201ENST00000508931 1278 ntBASIC14.15□□□□□ -0.14
SOX3P41225 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.15□□□□□ -0.14
SOX3P41225 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.15□□□□□ -0.14
SOX3P41225 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 AL359881.2-201ENST00000602973 570 ntBASIC14.15□□□□□ -0.14
SOX3P41225 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 AP005019.2-201ENST00000615104 511 ntBASIC14.15□□□□□ -0.14
SOX3P41225 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.15□□□□□ -0.14
SOX3P41225 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC14.15□□□□□ -0.14
SOX3P41225 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
SOX3P41225 AC093525.8-201ENST00000624099 1342 ntBASIC14.15□□□□□ -0.15
SOX3P41225 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
SOX3P41225 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
SOX3P41225 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
SOX3P41225 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC14.14□□□□□ -0.15
SOX3P41225 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms