Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AP005482.1-201ENST00000563722 1273 ntBASIC14.7□□□□□ -0.06
SHMT2P34897 DUX4L47-201ENST00000566374 394 ntBASIC14.7□□□□□ -0.06
SHMT2P34897 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.7□□□□□ -0.06
SHMT2P34897 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
SHMT2P34897 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SHMT2P34897 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.7□□□□□ -0.06
SHMT2P34897 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.7□□□□□ -0.06
SHMT2P34897 LINC01230-201ENST00000625222 3017 ntBASIC14.7□□□□□ -0.06
SHMT2P34897 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SHMT2P34897 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.7□□□□□ -0.06
SHMT2P34897 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.7□□□□□ -0.06
SHMT2P34897 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 AC015656.1-201ENST00000624209 3578 ntBASIC14.69□□□□□ -0.06
SHMT2P34897 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.69□□□□□ -0.06
SHMT2P34897 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 CTBP2P5-201ENST00000454986 1264 ntBASIC14.69□□□□□ -0.06
SHMT2P34897 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.69□□□□□ -0.06
SHMT2P34897 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.69□□□□□ -0.06
SHMT2P34897 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC14.69□□□□□ -0.06
SHMT2P34897 AP000812.2-201ENST00000538934 718 ntBASIC14.69□□□□□ -0.06
SHMT2P34897 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC14.69□□□□□ -0.06
SHMT2P34897 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.69□□□□□ -0.06
SHMT2P34897 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 AC244669.2-201ENST00000612320 853 ntBASIC14.69□□□□□ -0.06
SHMT2P34897 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 AMT-204ENST00000427987 1646 ntTSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 LILRP1-201ENST00000444199 1370 ntBASIC14.69□□□□□ -0.06
SHMT2P34897 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.69□□□□□ -0.06
SHMT2P34897 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.69□□□□□ -0.06
SHMT2P34897 MIR600HG-201ENST00000449175 5984 ntBASIC14.69□□□□□ -0.06
SHMT2P34897 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SHMT2P34897 AC006504.5-208ENST00000588784 2401 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SHMT2P34897 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 AL137783.1-201ENST00000623494 1896 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.68□□□□□ -0.06
SHMT2P34897 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SHMT2P34897 TPM3P8-201ENST00000330554 643 ntBASIC14.68□□□□□ -0.06
SHMT2P34897 MIR658-201ENST00000385210 100 ntBASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms