Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC15.25■□□□□ 0.03
COL9A1P20849 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 AC080013.5-201ENST00000607044 679 ntBASIC15.25■□□□□ 0.03
COL9A1P20849 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.25■□□□□ 0.03
COL9A1P20849 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC15.25■□□□□ 0.03
COL9A1P20849 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.25■□□□□ 0.03
COL9A1P20849 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.25■□□□□ 0.03
COL9A1P20849 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
COL9A1P20849 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
COL9A1P20849 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.25■□□□□ 0.03
COL9A1P20849 AL118508.1-201ENST00000613502 2345 ntBASIC15.25■□□□□ 0.03
COL9A1P20849 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 AC105250.1-201ENST00000509378 2057 ntBASIC15.24■□□□□ 0.03
COL9A1P20849 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.24■□□□□ 0.03
COL9A1P20849 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC15.24■□□□□ 0.03
COL9A1P20849 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC15.24■□□□□ 0.03
COL9A1P20849 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 RWDD4P1-201ENST00000488019 565 ntBASIC15.24■□□□□ 0.03
COL9A1P20849 CAP2-207ENST00000493172 861 ntTSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 AC106047.2-201ENST00000511723 743 ntBASIC15.24■□□□□ 0.03
COL9A1P20849 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.24■□□□□ 0.03
COL9A1P20849 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.24■□□□□ 0.03
COL9A1P20849 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 LINC01783-202ENST00000614408 828 ntBASIC15.24■□□□□ 0.03
COL9A1P20849 BX284668.2-205ENST00000619677 828 ntBASIC15.24■□□□□ 0.03
COL9A1P20849 AP001184.1-201ENST00000637936 376 ntBASIC15.24■□□□□ 0.03
COL9A1P20849 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 AL359258.3-201ENST00000622910 2331 ntBASIC15.24■□□□□ 0.03
COL9A1P20849 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL9A1P20849 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
COL9A1P20849 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC15.24■□□□□ 0.03
COL9A1P20849 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC15.24■□□□□ 0.03
COL9A1P20849 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL9A1P20849 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL9A1P20849 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
COL9A1P20849 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
COL9A1P20849 FKBP4P6-201ENST00000457486 1332 ntBASIC15.23■□□□□ 0.03
COL9A1P20849 AL360270.3-201ENST00000609118 1348 ntBASIC15.23■□□□□ 0.03
COL9A1P20849 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL9A1P20849 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.23■□□□□ 0.03
COL9A1P20849 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.23■□□□□ 0.03
COL9A1P20849 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL9A1P20849 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
COL9A1P20849 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL9A1P20849 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.23■□□□□ 0.03
COL9A1P20849 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC15.23■□□□□ 0.03
COL9A1P20849 RPL3P5-201ENST00000441645 1232 ntBASIC15.23■□□□□ 0.03
COL9A1P20849 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC15.23■□□□□ 0.03
COL9A1P20849 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC15.23■□□□□ 0.03
COL9A1P20849 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.23■□□□□ 0.03
COL9A1P20849 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.23■□□□□ 0.03
COL9A1P20849 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC15.23■□□□□ 0.03
COL9A1P20849 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
COL9A1P20849 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL9A1P20849 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL9A1P20849 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC15.23■□□□□ 0.03
COL9A1P20849 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC15.23■□□□□ 0.03
COL9A1P20849 SIGLEC18P-201ENST00000602271 909 ntBASIC15.23■□□□□ 0.03
COL9A1P20849 AP006248.1-201ENST00000610471 67 ntBASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms