Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.34■□□□□ 0.37
ERCC3P19447 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
ERCC3P19447 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC3P19447 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
ERCC3P19447 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC3P19447 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC3P19447 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.33■□□□□ 0.37
ERCC3P19447 AC022532.1-201ENST00000624563 1728 ntBASIC17.33■□□□□ 0.37
ERCC3P19447 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC3P19447 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
ERCC3P19447 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
ERCC3P19447 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
ERCC3P19447 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ERCC3P19447 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC17.33■□□□□ 0.36
ERCC3P19447 KRT8P29-201ENST00000420409 1371 ntBASIC17.33■□□□□ 0.36
ERCC3P19447 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
ERCC3P19447 FKBP4P6-201ENST00000457486 1332 ntBASIC17.33■□□□□ 0.36
ERCC3P19447 TUBBP5-203ENST00000508529 1334 ntBASIC17.33■□□□□ 0.36
ERCC3P19447 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC17.33■□□□□ 0.36
ERCC3P19447 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
ERCC3P19447 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.33■□□□□ 0.36
ERCC3P19447 AC021723.1-201ENST00000486306 515 ntBASIC17.33■□□□□ 0.36
ERCC3P19447 IMP3P2-201ENST00000489760 475 ntBASIC17.33■□□□□ 0.36
ERCC3P19447 AC005740.2-201ENST00000511085 419 ntBASIC17.33■□□□□ 0.36
ERCC3P19447 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC17.33■□□□□ 0.36
ERCC3P19447 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.33■□□□□ 0.36
ERCC3P19447 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.33■□□□□ 0.36
ERCC3P19447 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.33■□□□□ 0.36
ERCC3P19447 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC17.33■□□□□ 0.36
ERCC3P19447 AP001505.2-201ENST00000616815 443 ntBASIC17.33■□□□□ 0.36
ERCC3P19447 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.33■□□□□ 0.36
ERCC3P19447 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
ERCC3P19447 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.33■□□□□ 0.36
ERCC3P19447 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
ERCC3P19447 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
ERCC3P19447 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ERCC3P19447 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.32■□□□□ 0.36
ERCC3P19447 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC3P19447 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.32■□□□□ 0.36
ERCC3P19447 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.32■□□□□ 0.36
ERCC3P19447 KRT8P19-201ENST00000551916 1455 ntBASIC17.32■□□□□ 0.36
ERCC3P19447 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
ERCC3P19447 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17.32■□□□□ 0.36
ERCC3P19447 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC3P19447 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC3P19447 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 CRCP-204ENST00000398684 492 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC3P19447 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.32■□□□□ 0.36
ERCC3P19447 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC17.32■□□□□ 0.36
ERCC3P19447 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.32■□□□□ 0.36
ERCC3P19447 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 MIR4683-201ENST00000579659 81 ntBASIC17.32■□□□□ 0.36
ERCC3P19447 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC3P19447 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC3P19447 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.32■□□□□ 0.36
ERCC3P19447 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC17.32■□□□□ 0.36
ERCC3P19447 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
ERCC3P19447 AC091812.3-201ENST00000621362 345 ntBASIC17.32■□□□□ 0.36
ERCC3P19447 CU633904.3-201ENST00000624042 1029 ntBASIC17.32■□□□□ 0.36
ERCC3P19447 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
ERCC3P19447 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 AC126755.1-201ENST00000525846 6405 ntBASIC17.32■□□□□ 0.36
ERCC3P19447 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
ERCC3P19447 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ERCC3P19447 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ERCC3P19447 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
ERCC3P19447 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms