Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 AC020658.7-201ENST00000624274 2442 ntBASIC15.12■□□□□ 0.01
VIMP08670 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 HLA-H-201ENST00000383620 1096 ntBASIC15.12■□□□□ 0.01
VIMP08670 AC002056.1-201ENST00000395613 760 ntBASIC15.12■□□□□ 0.01
VIMP08670 AC104457.1-201ENST00000401024 814 ntBASIC15.12■□□□□ 0.01
VIMP08670 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.12■□□□□ 0.01
VIMP08670 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC15.12■□□□□ 0.01
VIMP08670 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.12■□□□□ 0.01
VIMP08670 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.12■□□□□ 0.01
VIMP08670 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC15.12■□□□□ 0.01
VIMP08670 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 AC083964.2-201ENST00000623988 2396 ntBASIC15.12■□□□□ 0.01
VIMP08670 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 VPS9D1-202ENST00000561976 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VIMP08670 CICP16-201ENST00000502609 2813 ntBASIC15.12■□□□□ 0.01
VIMP08670 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.11■□□□□ 0.01
VIMP08670 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
VIMP08670 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC15.11■□□□□ 0.01
VIMP08670 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.11■□□□□ 0.01
VIMP08670 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 AC009947.1-201ENST00000444350 727 ntBASIC15.11■□□□□ 0.01
VIMP08670 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 AC015910.1-201ENST00000579400 975 ntBASIC15.11■□□□□ 0.01
VIMP08670 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.11■□□□□ 0.01
VIMP08670 AC008267.7-201ENST00000624570 1194 ntBASIC15.11■□□□□ 0.01
VIMP08670 AL645728.2-202ENST00000641679 227 ntBASIC15.11■□□□□ 0.01
VIMP08670 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.11■□□□□ 0.01
VIMP08670 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC15.11■□□□□ 0.01
VIMP08670 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 MKNK1-203ENST00000371945 2618 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VIMP08670 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 AGL-203ENST00000361915 7368 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
VIMP08670 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 AL139385.1-201ENST00000611744 3272 ntBASIC15.1■□□□□ 0.01
VIMP08670 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
VIMP08670 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
VIMP08670 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms