Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC12.82□□□□□ -0.36
SDCBPO00560 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
SDCBPO00560 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC12.82□□□□□ -0.36
SDCBPO00560 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.82□□□□□ -0.36
SDCBPO00560 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.82□□□□□ -0.36
SDCBPO00560 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
SDCBPO00560 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
SDCBPO00560 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.81□□□□□ -0.36
SDCBPO00560 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 CYP2AB1P-202ENST00000454440 1456 ntBASIC12.81□□□□□ -0.36
SDCBPO00560 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.81□□□□□ -0.36
SDCBPO00560 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.81□□□□□ -0.36
SDCBPO00560 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.81□□□□□ -0.36
SDCBPO00560 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.81□□□□□ -0.36
SDCBPO00560 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC12.81□□□□□ -0.36
SDCBPO00560 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 DUX4L27-201ENST00000554796 1261 ntBASIC12.81□□□□□ -0.36
SDCBPO00560 RPL28-205ENST00000558131 444 ntTSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
SDCBPO00560 SSH2-210ENST00000582084 560 ntTSL 3 BASIC12.81□□□□□ -0.36
SDCBPO00560 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.81□□□□□ -0.36
SDCBPO00560 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 AL390754.1-201ENST00000619088 582 ntBASIC12.81□□□□□ -0.36
SDCBPO00560 AL590560.3-201ENST00000623350 461 ntBASIC12.81□□□□□ -0.36
SDCBPO00560 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 AC138969.2-201ENST00000532739 9932 ntBASIC12.81□□□□□ -0.36
SDCBPO00560 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 AL121723.1-201ENST00000445194 1519 ntBASIC12.81□□□□□ -0.36
SDCBPO00560 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC12.81□□□□□ -0.36
SDCBPO00560 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 LILRP1-201ENST00000444199 1370 ntBASIC12.81□□□□□ -0.36
SDCBPO00560 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC12.81□□□□□ -0.36
SDCBPO00560 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC12.81□□□□□ -0.36
SDCBPO00560 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
SDCBPO00560 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 AL031595.1-201ENST00000623969 4709 ntBASIC12.8□□□□□ -0.36
SDCBPO00560 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
SDCBPO00560 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.8□□□□□ -0.36
SDCBPO00560 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
SDCBPO00560 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms