Protein–RNA interactions for Protein: Q9Y296

TRAPPC4, Trafficking protein particle complex subunit 4, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4Q9Y296 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 AL359711.2-201ENST00000563105 872 ntBASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 CTBP2P3-201ENST00000585629 1255 ntBASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 PPT1-213ENST00000641319 2388 ntBASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 AGER-206ENST00000375070 1463 ntTSL 5 BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 AL161772.1-201ENST00000610494 4412 ntBASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRAPPC4Q9Y296 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 ZBTB20-215ENST00000481632 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 ACKR1-201ENST00000368121 1240 ntBASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 AC098614.1-201ENST00000368528 745 ntBASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 HNRNPA1P13-201ENST00000510646 963 ntBASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 BX539320.1-201ENST00000623759 877 ntBASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 PRSS30P-206ENST00000641773 873 ntBASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRAPPC4Q9Y296 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 USP31-203ENST00000567975 2142 ntTSL 2 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
TRAPPC4Q9Y296 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms