Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ST20-AS1-201ENST00000560255 4223 ntBASIC12.16□□□□□ -0.46
FOXA2Q9Y261 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 INTS4P2-202ENST00000614726 2019 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC134915.1-201ENST00000426461 574 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 HLA-K-203ENST00000430151 1046 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 VDAC1P7-201ENST00000462417 847 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 LHX6-205ENST00000464484 666 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC092552.1-201ENST00000547243 906 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 TP53TG3HP-202ENST00000569755 579 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 SPDYE22P-201ENST00000582158 798 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 BRI3BPP1-201ENST00000594224 787 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 CHCHD2P3-201ENST00000603038 451 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 TMEM261P1-201ENST00000604899 340 ntBASIC12.15□□□□□ -0.46
FOXA2Q9Y261 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.46
FOXA2Q9Y261 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
FOXA2Q9Y261 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC12.15□□□□□ -0.47
FOXA2Q9Y261 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.15□□□□□ -0.47
FOXA2Q9Y261 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC12.15□□□□□ -0.47
FOXA2Q9Y261 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC12.15□□□□□ -0.47
FOXA2Q9Y261 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC12.15□□□□□ -0.47
FOXA2Q9Y261 AL137783.1-201ENST00000623494 1896 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 AC092135.3-201ENST00000624151 1846 ntBASIC12.14□□□□□ -0.47
FOXA2Q9Y261 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
FOXA2Q9Y261 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC12.14□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms