Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 RNA5SP486-201ENST00000515961 83 ntBASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 ORC6-206ENST00000568364 888 ntTSL 5 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 AC138696.2-201ENST00000607376 223 ntBASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 AP001267.2-201ENST00000532619 2086 ntBASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SMC4Q9NTJ3 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SMC4Q9NTJ3 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 RPL8-205ENST00000527914 551 ntTSL 3 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 AC078819.1-201ENST00000547454 765 ntBASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 AC012085.1-201ENST00000548270 765 ntBASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 APOC4-201ENST00000591600 348 ntTSL 3 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 FAM45BP-202ENST00000592932 1624 ntBASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 FKBP4P6-201ENST00000457486 1332 ntBASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC19.2■□□□□ 0.66
SMC4Q9NTJ3 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 SERF2-209ENST00000409646 559 ntTSL 4 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 HIST1H2BPS3-201ENST00000419683 341 ntBASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 NAA50-208ENST00000497255 789 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 FTLP10-202ENST00000505798 471 ntBASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 APRT-204ENST00000563655 709 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 AC138951.2-201ENST00000623455 1161 ntBASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 AL354702.1-201ENST00000442006 1960 ntBASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SMC4Q9NTJ3 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
SMC4Q9NTJ3 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms