Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 RN7SL752P-201ENST00000463779 287 ntBASIC15.99■□□□□ 0.15
SIX2Q9NPC8 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 AP005018.1-201ENST00000525475 301 ntBASIC15.99■□□□□ 0.15
SIX2Q9NPC8 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 ECM1P1-201ENST00000604092 1279 ntBASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 KHSRPP1-201ENST00000427983 1768 ntBASIC15.99■□□□□ 0.15
SIX2Q9NPC8 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 AC139712.1-201ENST00000378256 1875 ntBASIC15.99■□□□□ 0.15
SIX2Q9NPC8 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
SIX2Q9NPC8 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AC020910.6-201ENST00000623084 1459 ntBASIC15.98■□□□□ 0.15
SIX2Q9NPC8 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AC005229.1-201ENST00000392885 409 ntBASIC15.98■□□□□ 0.15
SIX2Q9NPC8 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 INE1-201ENST00000456273 945 ntBASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AL590640.2-201ENST00000457038 527 ntBASIC15.98■□□□□ 0.15
SIX2Q9NPC8 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AC008735.3-201ENST00000596646 500 ntBASIC15.98■□□□□ 0.15
SIX2Q9NPC8 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AC132938.4-201ENST00000623835 848 ntBASIC15.98■□□□□ 0.15
SIX2Q9NPC8 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 FBXL4-201ENST00000229971 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC15.98■□□□□ 0.15
SIX2Q9NPC8 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.97■□□□□ 0.15
SIX2Q9NPC8 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms