Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
NKX3-1Q99801 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
NKX3-1Q99801 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 SPDYE7P-202ENST00000420373 878 ntBASIC13.16□□□□□ -0.3
NKX3-1Q99801 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 AC010336.2-201ENST00000564226 506 ntBASIC13.16□□□□□ -0.3
NKX3-1Q99801 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 TEX28P1-201ENST00000613479 1221 ntBASIC13.16□□□□□ -0.3
NKX3-1Q99801 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 TEX28P2-201ENST00000617764 1221 ntBASIC13.16□□□□□ -0.3
NKX3-1Q99801 AP001059.3-201ENST00000619053 235 ntBASIC13.16□□□□□ -0.3
NKX3-1Q99801 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 MX1-218ENST00000619682 1980 ntTSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
NKX3-1Q99801 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
NKX3-1Q99801 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 AC152010.1-201ENST00000415779 2006 ntBASIC13.15□□□□□ -0.3
NKX3-1Q99801 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
NKX3-1Q99801 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 MIR943-201ENST00000401286 94 ntBASIC13.15□□□□□ -0.3
NKX3-1Q99801 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 KLF2P3-201ENST00000451977 1087 ntBASIC13.15□□□□□ -0.3
NKX3-1Q99801 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC13.15□□□□□ -0.3
NKX3-1Q99801 KRT18P43-201ENST00000469825 1281 ntBASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms