Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.56■□□□□ 0.4
SMC1BQ8NDV3 PCDHB19P-201ENST00000570871 2371 ntBASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 AC106886.4-201ENST00000623557 2502 ntBASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 RN7SKP230-201ENST00000365642 335 ntBASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 CSNK1G2P1-201ENST00000442675 955 ntBASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 MIR2392-201ENST00000584881 84 ntBASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 AC010503.4-201ENST00000615487 688 ntBASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 CR392039.1-201ENST00000623217 204 ntBASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 AC018629.1-201ENST00000623381 1736 ntBASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
SMC1BQ8NDV3 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 CICP6-201ENST00000457191 2729 ntBASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AL929302.1-201ENST00000426556 871 ntBASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 KRT18P46-201ENST00000435568 1279 ntBASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AL451000.1-201ENST00000451300 1186 ntBASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 RN7SL846P-201ENST00000467429 292 ntBASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 RHEB-207ENST00000496004 744 ntTSL 2 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AC007298.2-201ENST00000551849 862 ntTSL 3 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC17.54■□□□□ 0.4
SMC1BQ8NDV3 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms