Protein–RNA interactions for Protein: Q8N3V7

SYNPO, Synaptopodin, humanhuman

Predictions only

Length 929 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPOQ8N3V7 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 AC069218.1-201ENST00000435269 762 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 NOC2LP1-201ENST00000450578 752 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 CEP164P1-201ENST00000455142 418 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 AC104784.1-201ENST00000473096 294 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 RTN3P1-201ENST00000536295 711 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 IQSEC3P1-201ENST00000538799 536 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 MIR3147-201ENST00000577811 66 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 AC009884.2-201ENST00000603110 324 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 COX6A1P2-201ENST00000620597 330 ntBASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
SYNPOQ8N3V7 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AC098935.1-201ENST00000446057 611 ntBASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 MIR4754-201ENST00000582477 89 ntBASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AC006486.2-201ENST00000624246 2199 ntBASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AC126755.1-201ENST00000525846 6405 ntBASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 E2F3P2-201ENST00000447755 1422 ntBASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 AL008718.2-201ENST00000609206 1313 ntBASIC15.16■□□□□ 0.02
SYNPOQ8N3V7 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms