Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
HIST1H1AQ02539 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HIST1H1AQ02539 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
HIST1H1AQ02539 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
HIST1H1AQ02539 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
HIST1H1AQ02539 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC11.58□□□□□ -0.55
HIST1H1AQ02539 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.55
HIST1H1AQ02539 HAL-202ENST00000538703 2637 ntTSL 2 BASIC11.58□□□□□ -0.55
HIST1H1AQ02539 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 AL359881.3-201ENST00000602640 1721 ntBASIC11.58□□□□□ -0.56
HIST1H1AQ02539 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 PCDHGB8P-201ENST00000502926 1973 ntBASIC11.58□□□□□ -0.56
HIST1H1AQ02539 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 AC107890.1-201ENST00000422478 521 ntBASIC11.58□□□□□ -0.56
HIST1H1AQ02539 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 FAM86GP-201ENST00000448322 971 ntBASIC11.58□□□□□ -0.56
HIST1H1AQ02539 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 KRT18P43-201ENST00000469825 1281 ntBASIC11.58□□□□□ -0.56
HIST1H1AQ02539 SLBP-205ENST00000488267 987 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 LINC01115-203ENST00000606068 577 ntBASIC11.58□□□□□ -0.56
HIST1H1AQ02539 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 MFF-204ENST00000353339 2186 ntTSL 5 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HIST1H1AQ02539 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 HNRNPA3P1-201ENST00000401429 1139 ntBASIC11.57□□□□□ -0.56
HIST1H1AQ02539 RAD18-204ENST00000418463 563 ntTSL 4 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 RAD18-205ENST00000421052 582 ntTSL 3 BASIC11.57□□□□□ -0.56
HIST1H1AQ02539 GHSR-202ENST00000427970 912 ntBASIC11.57□□□□□ -0.56
HIST1H1AQ02539 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms