Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.36□□□□□ -0.43
CDX1P47902 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.36□□□□□ -0.43
CDX1P47902 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC12.36□□□□□ -0.43
CDX1P47902 DOC2GP-202ENST00000514950 1163 ntBASIC12.36□□□□□ -0.43
CDX1P47902 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC12.36□□□□□ -0.43
CDX1P47902 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.36□□□□□ -0.43
CDX1P47902 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC12.36□□□□□ -0.43
CDX1P47902 SRD5A3P1-201ENST00000603021 949 ntBASIC12.36□□□□□ -0.43
CDX1P47902 AC004461.2-201ENST00000629517 803 ntBASIC12.36□□□□□ -0.43
CDX1P47902 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.36□□□□□ -0.43
CDX1P47902 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
CDX1P47902 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 AC105206.1-202ENST00000314927 2368 ntBASIC12.36□□□□□ -0.43
CDX1P47902 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
CDX1P47902 Z97205.2-201ENST00000564697 1639 ntBASIC12.36□□□□□ -0.43
CDX1P47902 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 CICP16-201ENST00000502609 2813 ntBASIC12.36□□□□□ -0.43
CDX1P47902 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.36□□□□□ -0.43
CDX1P47902 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.36□□□□□ -0.43
CDX1P47902 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC12.36□□□□□ -0.43
CDX1P47902 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 AC112693.3-201ENST00000624819 1983 ntBASIC12.36□□□□□ -0.43
CDX1P47902 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
CDX1P47902 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 AC083964.2-201ENST00000623988 2396 ntBASIC12.35□□□□□ -0.43
CDX1P47902 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
CDX1P47902 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 OSM-203ENST00000403463 464 ntTSL 3 BASIC12.35□□□□□ -0.43
CDX1P47902 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 TMPRSS11CP-201ENST00000453277 683 ntBASIC12.35□□□□□ -0.43
CDX1P47902 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC12.35□□□□□ -0.43
CDX1P47902 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC12.35□□□□□ -0.43
CDX1P47902 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 AC104794.3-201ENST00000566840 1248 ntBASIC12.35□□□□□ -0.43
CDX1P47902 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC12.35□□□□□ -0.43
CDX1P47902 SPDYE22P-201ENST00000582158 798 ntBASIC12.35□□□□□ -0.43
CDX1P47902 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 AL662799.1-202ENST00000614205 422 ntBASIC12.35□□□□□ -0.43
CDX1P47902 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC12.35□□□□□ -0.43
CDX1P47902 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
CDX1P47902 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
CDX1P47902 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC12.35□□□□□ -0.43
CDX1P47902 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
CDX1P47902 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms