Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
COL18A1P39060 FUCA1P1-201ENST00000374476 1351 ntBASIC19.08■□□□□ 0.65
COL18A1P39060 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
COL18A1P39060 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
COL18A1P39060 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC19.08■□□□□ 0.65
COL18A1P39060 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
COL18A1P39060 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL18A1P39060 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL18A1P39060 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC19.08■□□□□ 0.64
COL18A1P39060 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
COL18A1P39060 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC19.08■□□□□ 0.64
COL18A1P39060 DDX39AP1-201ENST00000445147 1181 ntBASIC19.08■□□□□ 0.64
COL18A1P39060 GNG10P1-201ENST00000452289 199 ntBASIC19.08■□□□□ 0.64
COL18A1P39060 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC19.08■□□□□ 0.64
COL18A1P39060 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
COL18A1P39060 FAM86B3P-203ENST00000523992 854 ntBASIC19.08■□□□□ 0.64
COL18A1P39060 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC19.08■□□□□ 0.64
COL18A1P39060 AP005264.6-204ENST00000588436 719 ntBASIC19.08■□□□□ 0.64
COL18A1P39060 AC006483.2-201ENST00000609813 515 ntBASIC19.08■□□□□ 0.64
COL18A1P39060 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC19.08■□□□□ 0.64
COL18A1P39060 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
COL18A1P39060 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC19.08■□□□□ 0.64
COL18A1P39060 AC138035.3-201ENST00000622706 2791 ntBASIC19.08■□□□□ 0.64
COL18A1P39060 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC19.08■□□□□ 0.64
COL18A1P39060 AL109954.1-202ENST00000564051 2148 ntBASIC19.08■□□□□ 0.64
COL18A1P39060 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
COL18A1P39060 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL18A1P39060 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL18A1P39060 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL18A1P39060 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC19.07■□□□□ 0.64
COL18A1P39060 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL18A1P39060 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.07■□□□□ 0.64
COL18A1P39060 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC19.07■□□□□ 0.64
COL18A1P39060 BAX-205ENST00000391871 687 ntTSL 5 BASIC19.07■□□□□ 0.64
COL18A1P39060 AC025186.1-201ENST00000478174 870 ntBASIC19.07■□□□□ 0.64
COL18A1P39060 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC19.07■□□□□ 0.64
COL18A1P39060 SKA2-205ENST00000580541 689 ntTSL 3 BASIC19.07■□□□□ 0.64
COL18A1P39060 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC19.07■□□□□ 0.64
COL18A1P39060 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL18A1P39060 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL18A1P39060 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.07■□□□□ 0.64
COL18A1P39060 MSANTD2P1-201ENST00000445341 1368 ntBASIC19.07■□□□□ 0.64
COL18A1P39060 CEP250-201ENST00000397524 1419 ntTSL 5 BASIC19.07■□□□□ 0.64
COL18A1P39060 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
COL18A1P39060 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
COL18A1P39060 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.07■□□□□ 0.64
COL18A1P39060 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
COL18A1P39060 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC19.07■□□□□ 0.64
COL18A1P39060 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 CHCHD2P2-201ENST00000503744 321 ntBASIC19.06■□□□□ 0.64
COL18A1P39060 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC19.06■□□□□ 0.64
COL18A1P39060 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC19.06■□□□□ 0.64
COL18A1P39060 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC19.06■□□□□ 0.64
COL18A1P39060 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
COL18A1P39060 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC19.06■□□□□ 0.64
COL18A1P39060 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC19.06■□□□□ 0.64
COL18A1P39060 SNORD3B-1-201ENST00000577988 758 ntBASIC19.06■□□□□ 0.64
COL18A1P39060 AC064801.2-201ENST00000625052 1303 ntBASIC19.06■□□□□ 0.64
COL18A1P39060 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC19.06■□□□□ 0.64
COL18A1P39060 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC19.06■□□□□ 0.64
COL18A1P39060 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 PGR-210ENST00000619228 3038 ntTSL 5 BASIC19.06■□□□□ 0.64
COL18A1P39060 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
COL18A1P39060 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.06■□□□□ 0.64
COL18A1P39060 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
COL18A1P39060 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC19.06■□□□□ 0.64
COL18A1P39060 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC19.06■□□□□ 0.64
COL18A1P39060 AL162632.1-201ENST00000546784 548 ntTSL 4 BASIC19.06■□□□□ 0.64
COL18A1P39060 FOXN3-AS2-201ENST00000554071 1262 ntBASIC19.06■□□□□ 0.64
COL18A1P39060 SRP14-204ENST00000558720 780 ntTSL 2 BASIC19.06■□□□□ 0.64
COL18A1P39060 AC104506.1-201ENST00000609247 429 ntBASIC19.06■□□□□ 0.64
COL18A1P39060 TP53-221ENST00000615910 1149 ntTSL 5 BASIC19.06■□□□□ 0.64
COL18A1P39060 MIR6746-201ENST00000620971 63 ntBASIC19.06■□□□□ 0.64
COL18A1P39060 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
COL18A1P39060 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC19.05■□□□□ 0.64
COL18A1P39060 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC19.05■□□□□ 0.64
COL18A1P39060 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
COL18A1P39060 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC19.05■□□□□ 0.64
COL18A1P39060 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
COL18A1P39060 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.05■□□□□ 0.64
COL18A1P39060 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 KRT8P43-201ENST00000406052 1458 ntBASIC19.05■□□□□ 0.64
COL18A1P39060 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC19.05■□□□□ 0.64
COL18A1P39060 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
COL18A1P39060 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.05■□□□□ 0.64
COL18A1P39060 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms