Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC17.55■□□□□ 0.4
BRCA1P38398 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC17.55■□□□□ 0.4
BRCA1P38398 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC17.55■□□□□ 0.4
BRCA1P38398 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
BRCA1P38398 AC078814.4-201ENST00000546650 327 ntBASIC17.55■□□□□ 0.4
BRCA1P38398 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC17.55■□□□□ 0.4
BRCA1P38398 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
BRCA1P38398 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC17.55■□□□□ 0.4
BRCA1P38398 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
BRCA1P38398 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 KRT8P43-201ENST00000406052 1458 ntBASIC17.55■□□□□ 0.4
BRCA1P38398 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
BRCA1P38398 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC17.55■□□□□ 0.4
BRCA1P38398 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
BRCA1P38398 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 RHOC-205ENST00000369636 786 ntTSL 2 BASIC17.54■□□□□ 0.4
BRCA1P38398 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC17.54■□□□□ 0.4
BRCA1P38398 AC098657.1-201ENST00000416270 1135 ntBASIC17.54■□□□□ 0.4
BRCA1P38398 AP000244.1-201ENST00000424582 201 ntBASIC17.54■□□□□ 0.4
BRCA1P38398 AC108724.1-201ENST00000481669 352 ntBASIC17.54■□□□□ 0.4
BRCA1P38398 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 CES1P2-201ENST00000566467 1242 ntBASIC17.54■□□□□ 0.4
BRCA1P38398 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC17.54■□□□□ 0.4
BRCA1P38398 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC17.54■□□□□ 0.4
BRCA1P38398 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC17.54■□□□□ 0.4
BRCA1P38398 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.54■□□□□ 0.4
BRCA1P38398 PDXDC2P-206ENST00000534700 1315 ntBASIC17.54■□□□□ 0.4
BRCA1P38398 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.54■□□□□ 0.4
BRCA1P38398 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.54■□□□□ 0.4
BRCA1P38398 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.54■□□□□ 0.4
BRCA1P38398 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
BRCA1P38398 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
BRCA1P38398 AL121949.3-201ENST00000406684 385 ntBASIC17.54■□□□□ 0.4
BRCA1P38398 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 URAHP-205ENST00000610227 398 ntBASIC17.54■□□□□ 0.4
BRCA1P38398 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
BRCA1P38398 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
BRCA1P38398 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
BRCA1P38398 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
BRCA1P38398 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 AC126365.1-201ENST00000578585 1514 ntBASIC17.53■□□□□ 0.4
BRCA1P38398 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC17.53■□□□□ 0.4
BRCA1P38398 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.53■□□□□ 0.4
BRCA1P38398 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
BRCA1P38398 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.53■□□□□ 0.4
BRCA1P38398 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC17.53■□□□□ 0.4
BRCA1P38398 BX679664.3-201ENST00000414070 555 ntBASIC17.53■□□□□ 0.4
BRCA1P38398 AC113935.1-201ENST00000471722 555 ntBASIC17.53■□□□□ 0.4
BRCA1P38398 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 PMFBP1-208ENST00000537792 955 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC17.53■□□□□ 0.4
BRCA1P38398 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC17.53■□□□□ 0.4
BRCA1P38398 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC17.53■□□□□ 0.4
BRCA1P38398 AL359091.4-201ENST00000610052 409 ntBASIC17.53■□□□□ 0.4
BRCA1P38398 AC026336.4-201ENST00000624565 1050 ntBASIC17.53■□□□□ 0.4
BRCA1P38398 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
BRCA1P38398 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
BRCA1P38398 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
BRCA1P38398 LTB4R2-202ENST00000528054 3092 ntBASIC17.53■□□□□ 0.4
BRCA1P38398 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
BRCA1P38398 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
BRCA1P38398 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms