Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
CIITAP33076 SMS-201ENST00000379404 1174 ntTSL 3 BASIC16.78■□□□□ 0.28
CIITAP33076 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC16.78■□□□□ 0.28
CIITAP33076 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC16.78■□□□□ 0.28
CIITAP33076 POM121L10P-201ENST00000436994 1285 ntBASIC16.78■□□□□ 0.28
CIITAP33076 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC16.78■□□□□ 0.28
CIITAP33076 CICP12-201ENST00000455801 843 ntBASIC16.78■□□□□ 0.28
CIITAP33076 PFN1P12-201ENST00000455938 534 ntBASIC16.78■□□□□ 0.28
CIITAP33076 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.78■□□□□ 0.28
CIITAP33076 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CIITAP33076 FAM8A2P-201ENST00000528813 1142 ntBASIC16.78■□□□□ 0.28
CIITAP33076 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC16.78■□□□□ 0.28
CIITAP33076 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.78■□□□□ 0.28
CIITAP33076 MIR4538-201ENST00000581377 78 ntBASIC16.78■□□□□ 0.28
CIITAP33076 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.78■□□□□ 0.28
CIITAP33076 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC16.78■□□□□ 0.28
CIITAP33076 AC132192.2-201ENST00000596206 1147 ntBASIC16.78■□□□□ 0.28
CIITAP33076 AL162426.1-201ENST00000624141 743 ntBASIC16.78■□□□□ 0.28
CIITAP33076 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.78■□□□□ 0.28
CIITAP33076 MVK-217ENST00000639206 367 ntTSL 5 BASIC16.78■□□□□ 0.28
CIITAP33076 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
CIITAP33076 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CIITAP33076 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.78■□□□□ 0.28
CIITAP33076 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 E2F3P2-201ENST00000447755 1422 ntBASIC16.78■□□□□ 0.28
CIITAP33076 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CIITAP33076 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
CIITAP33076 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.77■□□□□ 0.28
CIITAP33076 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.77■□□□□ 0.28
CIITAP33076 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.77■□□□□ 0.28
CIITAP33076 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 NDUFAB1P1-201ENST00000404262 460 ntBASIC16.77■□□□□ 0.28
CIITAP33076 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.77■□□□□ 0.28
CIITAP33076 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 CD74-212ENST00000524315 584 ntTSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC16.77■□□□□ 0.28
CIITAP33076 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.77■□□□□ 0.28
CIITAP33076 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CIITAP33076 AC104982.3-201ENST00000581995 514 ntBASIC16.77■□□□□ 0.28
CIITAP33076 AC027601.3-201ENST00000622907 509 ntBASIC16.77■□□□□ 0.28
CIITAP33076 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
CIITAP33076 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
CIITAP33076 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CIITAP33076 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.77■□□□□ 0.27
CIITAP33076 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.77■□□□□ 0.27
CIITAP33076 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CIITAP33076 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CIITAP33076 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CIITAP33076 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CIITAP33076 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CIITAP33076 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CIITAP33076 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CIITAP33076 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CIITAP33076 AL354702.1-201ENST00000442006 1960 ntBASIC16.77■□□□□ 0.27
CIITAP33076 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC16.77■□□□□ 0.27
CIITAP33076 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.77■□□□□ 0.27
CIITAP33076 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CIITAP33076 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CIITAP33076 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CIITAP33076 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.76■□□□□ 0.27
CIITAP33076 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CIITAP33076 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CIITAP33076 AC018735.1-201ENST00000437208 1502 ntBASIC16.76■□□□□ 0.27
CIITAP33076 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CIITAP33076 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CIITAP33076 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CIITAP33076 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms