Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
ABCA1O95477 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
ABCA1O95477 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC12.63□□□□□ -0.39
ABCA1O95477 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 BANP-201ENST00000286122 2368 ntTSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
ABCA1O95477 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 MIR648-201ENST00000385046 94 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 KRTAP19-9P-201ENST00000421795 191 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC12.63□□□□□ -0.39
ABCA1O95477 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC12.63□□□□□ -0.39
ABCA1O95477 NUP210P1-202ENST00000504322 710 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 AC022748.3-201ENST00000621828 275 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 AL353726.2-201ENST00000623259 884 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 AC079336.7-201ENST00000623428 1078 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 BX539320.1-201ENST00000623759 877 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 AC105250.1-201ENST00000509378 2057 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.63□□□□□ -0.39
ABCA1O95477 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 AC148477.4-201ENST00000613430 1793 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
ABCA1O95477 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC12.63□□□□□ -0.39
ABCA1O95477 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC12.63□□□□□ -0.39
ABCA1O95477 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC12.63□□□□□ -0.39
ABCA1O95477 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC12.63□□□□□ -0.39
ABCA1O95477 MIR4313-201ENST00000580760 101 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 AF254983.2-201ENST00000612331 135 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 CU633904.3-201ENST00000624042 1029 ntBASIC12.63□□□□□ -0.39
ABCA1O95477 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
ABCA1O95477 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.63□□□□□ -0.39
ABCA1O95477 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
ABCA1O95477 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC12.62□□□□□ -0.39
ABCA1O95477 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
ABCA1O95477 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
ABCA1O95477 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 CFL1-214ENST00000534769 758 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC12.62□□□□□ -0.39
ABCA1O95477 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC12.62□□□□□ -0.39
ABCA1O95477 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 AC103702.1-201ENST00000548801 2630 ntBASIC12.62□□□□□ -0.39
ABCA1O95477 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
ABCA1O95477 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.62□□□□□ -0.39
ABCA1O95477 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
ABCA1O95477 LRRC59-203ENST00000576448 1531 ntBASIC12.62□□□□□ -0.39
ABCA1O95477 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms