Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
FOXA2Q9Y261 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 AC093525.8-201ENST00000624099 1342 ntBASIC12.17□□□□□ -0.46
FOXA2Q9Y261 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 METTL26-204ENST00000397665 558 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 MPV17-208ENST00000405076 603 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 AC015656.1-201ENST00000624209 3578 ntBASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
FOXA2Q9Y261 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AC152010.1-201ENST00000415779 2006 ntBASIC12.16□□□□□ -0.46
FOXA2Q9Y261 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AC006504.5-208ENST00000588784 2401 ntBASIC12.16□□□□□ -0.46
FOXA2Q9Y261 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 PCNX4-203ENST00000406854 4666 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AL442647.2-201ENST00000429864 857 ntBASIC12.16□□□□□ -0.46
FOXA2Q9Y261 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AC022447.6-201ENST00000515522 438 ntBASIC12.16□□□□□ -0.46
FOXA2Q9Y261 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AC008494.3-201ENST00000606615 944 ntBASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AL662799.1-202ENST00000614205 422 ntBASIC12.16□□□□□ -0.46
FOXA2Q9Y261 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
FOXA2Q9Y261 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms