Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 AC023090.2-201ENST00000625182 2110 ntBASIC12.77□□□□□ -0.37
COL12A1Q99715 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC12.77□□□□□ -0.37
COL12A1Q99715 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC12.77□□□□□ -0.37
COL12A1Q99715 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 RN7SL357P-201ENST00000581065 298 ntBASIC12.77□□□□□ -0.37
COL12A1Q99715 AC022966.2-201ENST00000587434 367 ntBASIC12.77□□□□□ -0.37
COL12A1Q99715 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
COL12A1Q99715 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
COL12A1Q99715 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.76□□□□□ -0.37
COL12A1Q99715 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.76□□□□□ -0.37
COL12A1Q99715 AHCYP4-201ENST00000419201 1315 ntBASIC12.76□□□□□ -0.37
COL12A1Q99715 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC12.76□□□□□ -0.37
COL12A1Q99715 OR2R1P-201ENST00000441404 914 ntBASIC12.76□□□□□ -0.37
COL12A1Q99715 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC12.76□□□□□ -0.37
COL12A1Q99715 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 MT2A-202ENST00000561491 581 ntTSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC12.76□□□□□ -0.37
COL12A1Q99715 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
COL12A1Q99715 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC12.76□□□□□ -0.37
COL12A1Q99715 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC12.76□□□□□ -0.37
COL12A1Q99715 RN7SL665P-201ENST00000578793 300 ntBASIC12.76□□□□□ -0.37
COL12A1Q99715 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
COL12A1Q99715 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC12.76□□□□□ -0.37
COL12A1Q99715 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC12.76□□□□□ -0.37
COL12A1Q99715 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
COL12A1Q99715 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
COL12A1Q99715 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
COL12A1Q99715 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC12.75□□□□□ -0.37
COL12A1Q99715 OR5BD1P-201ENST00000532527 817 ntBASIC12.75□□□□□ -0.37
COL12A1Q99715 URB1-AS1-201ENST00000534991 831 ntBASIC12.75□□□□□ -0.37
COL12A1Q99715 AC023968.2-201ENST00000560593 1049 ntBASIC12.75□□□□□ -0.37
COL12A1Q99715 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC005746.3-201ENST00000614751 393 ntBASIC12.75□□□□□ -0.37
COL12A1Q99715 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC12.75□□□□□ -0.37
COL12A1Q99715 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC12.75□□□□□ -0.37
COL12A1Q99715 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.75□□□□□ -0.37
COL12A1Q99715 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC12.75□□□□□ -0.37
COL12A1Q99715 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
COL12A1Q99715 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
COL12A1Q99715 KRT8P6-201ENST00000399259 1207 ntBASIC12.75□□□□□ -0.37
COL12A1Q99715 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms