Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 AL139400.1-201ENST00000366220 510 ntBASIC16.24■□□□□ 0.19
CCDC42Q96M95 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 AL645937.2-201ENST00000396808 931 ntBASIC16.24■□□□□ 0.19
CCDC42Q96M95 AC114501.2-201ENST00000439631 535 ntBASIC16.24■□□□□ 0.19
CCDC42Q96M95 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 AC140878.1-201ENST00000565277 250 ntBASIC16.24■□□□□ 0.19
CCDC42Q96M95 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 AC134684.3-201ENST00000641758 218 ntBASIC16.24■□□□□ 0.19
CCDC42Q96M95 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC42Q96M95 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC42Q96M95 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 ARHGAP23P1-201ENST00000562773 1937 ntBASIC16.23■□□□□ 0.19
CCDC42Q96M95 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.23■□□□□ 0.19
CCDC42Q96M95 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 AC107890.1-201ENST00000422478 521 ntBASIC16.23■□□□□ 0.19
CCDC42Q96M95 TSEN15P1-201ENST00000423257 515 ntBASIC16.23■□□□□ 0.19
CCDC42Q96M95 AL353779.1-201ENST00000434793 351 ntBASIC16.23■□□□□ 0.19
CCDC42Q96M95 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.23■□□□□ 0.19
CCDC42Q96M95 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 AC025678.2-201ENST00000562061 970 ntBASIC16.23■□□□□ 0.19
CCDC42Q96M95 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC42Q96M95 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CCDC42Q96M95 CLK3P2-201ENST00000427566 1453 ntBASIC16.22■□□□□ 0.19
CCDC42Q96M95 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC42Q96M95 MST1P2-201ENST00000457982 2291 ntBASIC16.22■□□□□ 0.19
CCDC42Q96M95 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC42Q96M95 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms