Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CHMP4CQ96CF2 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CHMP4CQ96CF2 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
CHMP4CQ96CF2 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AGER-206ENST00000375070 1463 ntTSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AL158070.2-201ENST00000623713 1621 ntBASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AC005229.1-201ENST00000392885 409 ntBASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AC099336.1-201ENST00000417053 1171 ntBASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 GNRHR2-203ENST00000581100 1187 ntBASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CHMP4CQ96CF2 AL365209.1-201ENST00000624418 6473 ntBASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 CTBP1-AS2-206ENST00000581398 5652 ntBASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 HLA-V-201ENST00000429037 534 ntBASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 MIR6752-201ENST00000618442 71 ntBASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.94■□□□□ 0.46
CHMP4CQ96CF2 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms