Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 TLE1P1-201ENST00000422965 589 ntBASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 HMGB3P14-201ENST00000494195 599 ntBASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 MARK2P5-201ENST00000507649 634 ntBASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AL160314.3-201ENST00000556041 767 ntBASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AC091812.3-201ENST00000621362 345 ntBASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 PPT1-215ENST00000641471 2368 ntBASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.45□□□□□ -0.26
RNFT1Q5M7Z0 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 RBM38-204ENST00000371219 760 ntTSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AC011742.3-201ENST00000439053 820 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 VDAC1P1-201ENST00000439229 848 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 PUDPP3-201ENST00000445368 636 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 RN7SL769P-201ENST00000469386 295 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AC245884.6-201ENST00000515672 1067 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 COA4-204ENST00000541455 1038 ntTSL 5 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 SNORD3B-2-202ENST00000571722 791 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 RN7SL574P-201ENST00000581512 297 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AC016629.1-201ENST00000596579 586 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AL391001.1-201ENST00000602747 715 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 AC008825.2-201ENST00000603374 718 ntBASIC13.44□□□□□ -0.26
RNFT1Q5M7Z0 CU633904.3-201ENST00000624042 1029 ntBASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms