Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
LIM2P55344 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
LIM2P55344 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
LIM2P55344 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
LIM2P55344 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.24□□□□□ -0.13
LIM2P55344 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.24□□□□□ -0.13
LIM2P55344 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.24□□□□□ -0.13
LIM2P55344 U91328.1-201ENST00000437528 223 ntBASIC14.24□□□□□ -0.13
LIM2P55344 AC007551.1-201ENST00000457394 519 ntBASIC14.24□□□□□ -0.13
LIM2P55344 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
LIM2P55344 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 AC244669.2-201ENST00000612320 853 ntBASIC14.24□□□□□ -0.13
LIM2P55344 AL162274.1-201ENST00000617191 1098 ntBASIC14.24□□□□□ -0.13
LIM2P55344 ETV2-208ENST00000621247 941 ntTSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 AC018442.1-201ENST00000421439 2061 ntBASIC14.24□□□□□ -0.13
LIM2P55344 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
LIM2P55344 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
LIM2P55344 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.24□□□□□ -0.13
LIM2P55344 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
LIM2P55344 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.23□□□□□ -0.13
LIM2P55344 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 AC117489.1-201ENST00000625169 3217 ntBASIC14.23□□□□□ -0.13
LIM2P55344 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 AC097359.2-201ENST00000604992 2389 ntBASIC14.23□□□□□ -0.13
LIM2P55344 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.23□□□□□ -0.13
LIM2P55344 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 POM121L8P-201ENST00000417732 1281 ntBASIC14.23□□□□□ -0.13
LIM2P55344 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.23□□□□□ -0.13
LIM2P55344 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 POM121L9P-203ENST00000441984 1285 ntBASIC14.23□□□□□ -0.13
LIM2P55344 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 CROCCP4-201ENST00000457096 498 ntBASIC14.23□□□□□ -0.13
LIM2P55344 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
LIM2P55344 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
LIM2P55344 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LIM2P55344 KRT17P8-201ENST00000540749 863 ntBASIC14.23□□□□□ -0.13
LIM2P55344 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.23□□□□□ -0.13
LIM2P55344 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC14.23□□□□□ -0.13
LIM2P55344 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
LIM2P55344 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
LIM2P55344 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
LIM2P55344 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms